\relax \@writefile{toc}{\contentsline {chapter}{List of Figures}{v}} \@writefile{toc}{\contentsline {chapter}{List of Tables}{vi}} \@writefile{toc}{\contentsline {chapter}{Dedication}{vii}} \@writefile{toc}{\contentsline {chapter}{Acknowledgements}{viii}} \citation{bt97} \citation{gtfe32} \@writefile{toc}{\contentsline {chapter}{\numberline {1}Introduction}{1}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} \@writefile{toc}{\contentsline {section}{\numberline {1.1}Background on beam test hardware}{1}} \citation{nano} \citation{init} \citation{topct} \citation{mlp} \citation{mlp} \citation{mlp} \@writefile{toc}{\contentsline {section}{\numberline {1.2}Previous work on pCT experiment}{3}} \@writefile{lof}{\contentsline {figure}{\numberline {1.1}{\ignorespaces Example proton paths}}{4}} \newlabel{banana}{{1.1}{4}} \@writefile{toc}{\contentsline {section}{\numberline {1.3}Experimental issues}{4}} \newlabel{issues}{{1.3}{4}} \citation{ptsm} \@writefile{toc}{\contentsline {chapter}{\numberline {2}DAQ System Design}{6}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} \newlabel{daq}{{2}{6}} \citation{nicom} \citation{ibuscom} \@writefile{lof}{\contentsline {figure}{\numberline {2.1}{\ignorespaces Block diagram of beam test system}}{7}} \newlabel{block}{{2.1}{7}} \@writefile{toc}{\contentsline {section}{\numberline {2.1}Fanout board rework}{7}} \newlabel{rework}{{2.1}{7}} \citation{bkms} \@writefile{lof}{\contentsline {figure}{\numberline {2.2}{\ignorespaces Diagram of logic family conversions}}{9}} \newlabel{fanout}{{2.2}{9}} \@writefile{toc}{\contentsline {section}{\numberline {2.2}FPGA hardware design}{9}} \newlabel{fpga}{{2.2}{9}} \@writefile{toc}{\contentsline {subsection}{\numberline {2.2.1}Initialization}{10}} \@writefile{toc}{\contentsline {subsection}{\numberline {2.2.2}Trigger response}{11}} \@writefile{lof}{\contentsline {figure}{\numberline {2.3}{\ignorespaces Timing of signals generated during read out}}{12}} \newlabel{rdout}{{2.3}{12}} \@writefile{toc}{\contentsline {subsection}{\numberline {2.2.3}Formatting and buffering}{12}} \@writefile{lot}{\contentsline {table}{\numberline {2.1}{\ignorespaces Event data word dictionary}}{14}} \newlabel{codes}{{2.1}{14}} \@writefile{toc}{\contentsline {subsection}{\numberline {2.2.4}Handshaking and transmission}{14}} \@writefile{lof}{\contentsline {figure}{\numberline {2.4}{\ignorespaces Oscilloscope capture of signal distortion}}{15}} \newlabel{daqring}{{2.4}{15}} \citation{nicom} \citation{rootch} \@writefile{toc}{\contentsline {section}{\numberline {2.3}CTC integration}{16}} \@writefile{toc}{\contentsline {section}{\numberline {2.4}Software}{16}} \@writefile{toc}{\contentsline {chapter}{\numberline {3}System Verification}{18}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} \newlabel{verify}{{3}{18}} \@writefile{toc}{\contentsline {section}{\numberline {3.1}Pulse injection}{18}} \@writefile{toc}{\contentsline {section}{\numberline {3.2}Noise and source measurement}{18}} \@writefile{lof}{\contentsline {figure}{\numberline {3.1}{\ignorespaces Oscilloscope capture of response to calibration signals}}{19}} \newlabel{calsig}{{3.1}{19}} \@writefile{lof}{\contentsline {figure}{\numberline {3.2}{\ignorespaces Sample noise map}}{20}} \newlabel{noise}{{3.2}{20}} \@writefile{lof}{\contentsline {figure}{\numberline {3.3}{\ignorespaces Photograph of the setup used to measure particles from a $^{90}$Sr source.}}{21}} \newlabel{srcsetup}{{3.3}{21}} \@writefile{toc}{\contentsline {section}{\numberline {3.3}CTC calibration}{22}} \newlabel{caleqn}{{3.2}{22}} \@writefile{lof}{\contentsline {figure}{\numberline {3.4}{\ignorespaces A channel map acquired with a $^{90}$Sr source}}{23}} \newlabel{source}{{3.4}{23}} \@writefile{lof}{\contentsline {figure}{\numberline {3.5}{\ignorespaces Physical map of front end chips on module}}{24}} \newlabel{chipnum}{{3.5}{24}} \@writefile{lof}{\contentsline {figure}{\numberline {3.6}{\ignorespaces CTC calibration plot with line fit}}{25}} \newlabel{calfit}{{3.6}{25}} \@writefile{toc}{\contentsline {chapter}{\numberline {4}Beam Test Results}{26}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} \@writefile{toc}{\contentsline {section}{\numberline {4.1}Alignment}{26}} \@writefile{toc}{\contentsline {section}{\numberline {4.2}Tracking}{26}} \@writefile{lof}{\contentsline {figure}{\numberline {4.1}{\ignorespaces A one-dimensional profile of LLUMC's proton beam}}{27}} \newlabel{profile}{{4.1}{27}} \@writefile{toc}{\contentsline {section}{\numberline {4.3}Calorimeter}{27}} \@writefile{lof}{\contentsline {figure}{\numberline {4.2}{\ignorespaces Correlation plot of deflection angles of protons traversing air}}{28}} \newlabel{angcorr1}{{4.2}{28}} \@writefile{lof}{\contentsline {figure}{\numberline {4.3}{\ignorespaces Correlation plot of deflection angles of protons traversing PMMA}}{29}} \newlabel{angcorr2}{{4.3}{29}} \@writefile{lof}{\contentsline {figure}{\numberline {4.4}{\ignorespaces Projections of correlation plots}}{30}} \newlabel{angproj}{{4.4}{30}} \@writefile{lof}{\contentsline {figure}{\numberline {4.5}{\ignorespaces Energy distribution from double telescope run w/ no absorber}}{31}} \newlabel{energy1}{{4.5}{31}} \@writefile{lof}{\contentsline {figure}{\numberline {4.6}{\ignorespaces Energy distribution from double telescope run w/ PMMA absorber}}{32}} \newlabel{energy2}{{4.6}{32}} \@writefile{toc}{\contentsline {chapter}{\numberline {5}Conclusion}{33}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} \@writefile{toc}{\contentsline {chapter}{\numberline {A\\}Dictionary of acronyms}{35}} \@writefile{lof}{\addvspace {10\p@ }} \@writefile{lot}{\addvspace {10\p@ }} \bibcite{bt97}{1} \bibcite{gtfe32}{2} \bibcite{nano}{3} \bibcite{init}{4} \bibcite{topct}{5} \bibcite{mlp}{6} \bibcite{ptsm}{7} \bibcite{nicom}{8} \bibcite{ibuscom}{9} \@writefile{toc}{\contentsline {chapter}{Bibliography}{36}} \bibcite{rootch}{10} \bibcite{bkms}{11}