PUBLICATIONS
SCIPP
UCSC

Neuroproject at SCIPP

Publications

1. "The Retinal Readout Array", A. Litke and M. Meister, Nucl. Instrum. Meth. A310 (1991) 389.


2. "An Advanced Pixel Detector", A. M. Litke, Nucl. Instrum. Meth. A386 (1997) 167.


3. "The Retinal Readout System: an Application of Microstrip Detector Technology to
Neurobiology", A. M. Litke, Nucl. Instrum. Meth. A418 (1998) 203.


4. "The Retinal Readout System: A Status Report", A. M. Litke, Nucl. Instrum. Meth. A435
(1999) 242.


5. "Fabrication of microelectrode arrays for neural measurements from retinal tissue", W.
Cunningham, K. Mathieson, F. A. McEwan, A. Blue, R. McGeachy, J. A. McLeod, C. Morris-
Ellis, V. O'Shea, K. M. Smith, A. Litke and M. Rahman, J. Phys. D: Appl. Phys. 34 (2001)
2804.


6. "Large Scale Imaging of Retinal Output Activity", A. M. Litke, E. J. Chichilnisky, W.
Dabrowski, A. A. Grillo, P. Grybos, S. Kachiguine, M. Rahman and G. Taylor, Nucl.
Instrum. Meth. A501 (2003) 298.


7. "A Low Noise Multichannel Integrated Circuit for Recording Neuronal Signals Using
Microelectrode Arrays", W. Dabrowski, P. Grybos and A. M. Litke, Biosensors and
Bioelectronics 19 (2004) 749.


8. "What Does the Eye Tell the Brain?: Development of a System for the Large-Scale Recording
of Retinal Output Activity", A. M. Litke, N. Bezayiff, E. J. Chichilnisky, W. Cunningham, W.
Dabrowski, A. A. Grillo, M. Grivich, P. Grybos, P. Hottowy, S. Kachiguine, R. S. Kalmar, K.
Mathieson, D. Petrusca, M. Rahman and A. Sher, IEEE Transactions on Nuclear
Science 51 (2004) 1434.


9. "Large-Area Microelectrode Arrays for Recording of Neural Signals", K. Mathieson, S.
Kachiguine, C. Adams, W. Cunningham, D. Gunning, V. O'Shea, K. M. Smith, E. J.
Chichilnisky, A. M. Litke, A. Sher, and M. Rahman, IEEE Transactions on Nuclear Science 51
(2004) 2027.


10. "Fidelity of the ensemble code for visual motion in primate retina", E. S. Frechette, A. Sher,
M. I. Grivich, D. Petrusca, A. M. Litke, E. J. Chichilnisky, J. Neurophysiology 94 (2005) 119.


11. "Development of front-end ASICs for imaging neuronal activity in live tissue", W. Dabrowski,
P. Grybos, P. Hottowy, A. Skoczen, K. Swientek, A.A. Grillo, S. Kachiguine, A.M. Litke and
A. Sher, Nucl. Instrum. Meth. A541 (2005) 405.


12. "30 μm spacing 519-electrode arrays for in vitro retinal studies", D. Gunning, C. Adams, W.
Cunningham, K. Mathieson, V. O'Shea, K.M. Smith, E.J. Chichilnisky, A.M. Litke and M.
Rahman, Nucl. Instrum. Meth. A546 (2005) 148.


13. "The structure of multi-neuron firing patterns in primate retina", J. Shlens, G. D. Field, J.L.
Gauthier, M.I. Grivich, D. Petrusca, A. Sher , A.M. Litke and E.J. Chichilnisky, J.
Neuroscience 26 (2006) 8254.


14. "Electrical Stimulation of Mammalian Retinal Ganglion Cells With Multielectrode Arrays", C.
Sekirnjak, P. Hottowy, A. Sher, W. Dabrowski, A. M. Litke, and E. J. Chichilnisky, J.
Neurophys. 95 (2006) 3311.


15. "Performance of ultra-high-density microelectrode arrays", D.E. Gunning, E.J. Chichilnisky,
A.M. Litke, V. O'Shea, K.M. Smith and K. Mathieson, Nucl. Instrum. Meth. A576 (2007) 215.
16. "Large-scale multielectrode recording and stimulation of neural activity", A. Sher, E.J.
Chichilnisky, W. Dabrowski, A.A. Grillo, M. Grivich, D. Gunning, P. Hottowy, S. Kachiguine,
A.M. Litke, K. Mathieson and D. Petrusca, Nucl. Instrum. Meth. A579 (2007) 895.


17. "Identification and characterization of a Y-like primate retinal ganglion cell type", D.
Petrusca, M.I. Grivich, A. Sher, G.D. Field, J.L. Gauthier, M. Greschner, J. Shlens, E.J.
Chichilnisky, A.M. Litke, J. Neuroscience 27 (2007) 11019

.
18. "The classical complement cascade mediates CNS synapse elimination", B. Stevens, N. J.
Allen, L. E. Vazquez, G. R. Howell, K. S. Christopherson, N. Nouri, K. D. Micheva, A. K.
Mehalow, A. D. Huberman, B. Stafford, A. Sher, A. M. Litke, J. D. Lambris, S. J. Smith,
Simon W.M. John, and B. A. Barres, Cell 131 (2007) 1164.


19. "Spatial properties and functional organization of small bistratified ganglion cells in primate
retina", G. D. Field, A. Sher, J. L. Gauthier, M. Greschner, J. Shlens, A. M. Litke, E. J.
Chilchinisky, J. Neuroscience 27 (2007) 13261.


20. "A maximum entropy model applied to spatial and temporal correlations from cortical
networks in vitro", A. Tang, D. Jackson, J. Hobbs, W. Chen, J. L. Smith, H. Patel, A. Prieto,
D. Petrusca, M. I. Grivich, A. Sher, P. Hottowy, W. Dabrowski, A. M. Litke, J. M. Beggs,
J. Neuroscience 28 (2008) 505.


21. "High-resolution electrical stimulation of primate retina for epiretinal implant design", C.
Sekirnjak, P. Hottowy, A. Sher, W. Dabrowski, A. M. Litke and E. J. Chichilnisky, J.
Neuroscience 28 (2008) 4446. PMCID: PMC2681084


22. "Direction selectivity in the retina is established independent of visual experience and
cholinergic retinal waves", J. Elstrott, A. Anishchenko, M. Greschner, A. Sher, A. M. Litke,
E.J. Chichilnisky, M. B. Feller, Neuron 58 (2008) 499. PMCID: PMC2474739


23. "Spatio-temporal correlations and visual signaling in a complete neuronal population", J. W.
Pillow, J. Shlens, L. Paninski, A. Sher, A. M. Litke, E. J. Chichilnisky, E. P. Simoncelli,
Nature 454 (2008) 995. PMCID: PMC2684455


24. "High spatial resolution probes for neurobiology applications", D.E. Gunning, C.J. Kenney,
A.M. Litke, K. Mathieson, Nucl. Instrum. Meth. A604 (2009) 104-107.


25. "Receptive Fields in Primate Retina Are Coordinated to Sample Visual Space More
Uniformly", Gauthier JL, Field GD, Sher A, Greschner M, Shlens J, Litke AM, Chichilnisky
EJ, PLoS Biol 7 (2009) e1000063 PMCID: PMC2672597


26. "Uniform signal redundancy of parasol and midget ganglion cells in primate retina", Gauthier
JL, Field GD, Sher A, Shlens J, Greschner M, Litke AM, Chichilnisky EJ, J Neurosci. 29
(2009) 4675.


27. "The structure of large-scale synchronized firing in primate retina", Shlens J, Field GD,
Gauthier JL, Greschner M, Sher A, Litke AM, Chichilnisky EJ, J Neurosci. 29 (2009) 5022.
PMCID: PMC2678680


28. "High-sensitivity rod photoreceptor input to the blue-yellow color opponent pathway in
macaque retina", Field GD, Greschner M, Gauthier JL, Rangel C, Shlens J, Sher A, Marshak
DW, Litke AM, Chichilnisky EJ., Nature Neurosci. 12 (2009) 1159-64.


29. "Loss of responses to visual but not electrical stimulation in ganglion cells of rats with severe
photoreceptor degeneration", Sekirnjak C, Hulse C, Jepson LH, Hottowy P, Sher A,
Dabrowski W, Litke AM, Chichilnisky EJ. J Neurophysiol. 102 (2009) 3260-9.


30. "Spatial-temporal patterns of retinal waves underlying activity-dependent refinement of
retinofugal projections", Stafford BK, Sher A, Litke AM, Feldheim DA, Neuron 64 (2009) 200-
12.


31. "Receptive field mosaics of retinal ganglion cells are established without visual experience",
Anishchenko A, Greschner M, Elstrott J, Sher A, Litke AM, Feller MB, Chichilnisky EJ., J
Neurophysiol. 103 (2010) 1856-64.


32. "Maximum Entropy Approaches to Living Neural Networks", Yeh F-C, Tang A, Hobbs JP,
Hottowy P, Dabrowski W, Sher A, Litke AM, Beggs JM, Entropy 12 (2010) 89-106.
doi:10.3390/e12010089.


33. "Functional connectivity in the retina at the resolution of photoreceptors", Field GD,
Gauthier JL, Sher A, Greschner M, Machado TA, Jepson LH, Shlens J, Gunning DE,
Mathieson K, Dabrowski W, Paninski L, Litke AM, Chichilnisky EJ, Nature 467 (2010) 673-
7.


34. "Correlated firing among major ganglion cell types in primate retina", Greschner M, Shlens J,
Bakolitsa C, Field GD, Gauthier JL, Jepson LH, Sher A, Litke AM, Chichilnisky EJ, J Physiol.
589 (2011) 75-86.


35. "A wireless multi-channel neural amplifier for freely moving animals", Szuts TA, Fadeyev V,
Kachiguine S,Sher A, Grivich MV, Agrochão M, Hottowy P, Dabrowski W, Lubenov EV,
Siapas AG, Uchida N, Litke AM, Meister M., Nature Neurosci. 14 (2011) 263-9.


36. "Extending transfer entropy improves identification of effective connectivity in a spiking
cortical network model", Ito S, Hansen ME, Heiland R, Lumsdaine A, Litke AM, Beggs JM.
PLoS ONE 6 (2011): e27431. doi:10.1371/journal.pone.0027431.


37. "Competition is a driving force in topographic mapping", Triplett JW, Pfeiffenberger C,
Yamada J, Stafford BK, Sweeney NT, Litke AM, Sher A, Koulakov AA, Feldheim DA, Proc.
Natl. Acad. Sci. USA. 108 (2011) 19060-5.


38. "Changes in physiological properties of rat ganglion cells during retinal degeneration",
Sekirnjak C, Jepson LH, Hottowy P, Sher A, Dabrowski W, Litke AM, Chichilnisky EJ, J
Neurophysiol. 105 (2011) 2560-71.


39. "Efficient coding of spatial information in the primate retina", Doi, E., Gauthier, J. L., Field, G.
D., Shlens, J., Sher, A., Greschner, M., Machado, T. A., Jepson, L. H., Mathieson, K.,
Gunning, D. E., Litke, A. M., Paninski, L., Chichilnisky, E. J., Simoncelli, E. P., J.
Neurosci. 32 (2012) 16256–64.


40. "Properties and application of a multichannel integrated circuit for low-artifact, patterned
electrical stimulation of neural tissue", Hottowy P, Skocze? A, Gunning DE, Kachiguine S,
Mathieson K, Sher A, Wi?cek P, Litke AM, D?browski W., J Neural Eng. 9 (2012) 066005.
doi: 10.1088/1741-2560/9/6/066005.


41. "Focal electrical stimulation of major ganglion cell types in the primate retina for the design
of visual prostheses", Jepson LH, Hottowy P, Mathieson K, Gunning DE, Dabrowski W, Litke
AM, Chichilnisky EJ, J Neurosci. 33 (2013) 7194-205. doi: 10.1523/JNEUROSCI.4967-
12.2013.


42. "Dense arrays of micro-needles for recording and electrical stimulation of neural activity in
acute brain slices" Gunning DE, Beggs JM, Dabrowski W, Hottowy P, Kenney CJ, Sher A,
Litke AM, Mathieson K., J Neural Eng. 10 (2013) 016007. doi: 10.1088/1741-
2560/10/1/016007


43. "Retinal Representation of the Elementary Visual Signal", Li PH, Field GD, Greschner M,
Ahn D, Gunning DE, Mathieson K, Sher A, Litke AM, Chichilnisky E., Neuron 81 (2014) 130-
139.


44. "A Polyaxonal Amacrine Cell Population in the Primate Retina", Greschner M, Field G, Li P,
Schiff M, Gauthier J, Ahn D, Sher A, Litke A, Chichilnisky E, Journal of Neuroscience 34
(2014) 3597-3606.


45. "Spatially Patterned Electrical Stimulation to Enhance Resolution of Retinal Prostheses",
Jepson LH, Hottowy P, Mathieson K, Gunning DE, Dabrowski W, Litke AM, Chichilnisky EJ,
J Neurosci. 34 (2014) 4871-4881.


46. "High-Fidelity Reproduction of Spatiotemporal Visual Signals for Retinal Prosthesis", Jepson
LH, Hottowy P, Weiner GA, Dabrowski W, Litke AM, Chichilnisky EJ, Neuron 83 (2014) 87-
92.


47. "Large-scale, high-resolution multielectrode-array recording depicts functional network
differences of cortex and hippocampal cultures", Ito, S., Yeh, F-C., Hiolski, E., Rydygier, P.,
Gunning, D. E., Hottowy, P., Timme, N., Litke A. M., Beggs, J. M., PLOS ONE, 9(8) (2014),
e105324. doi:10.1371/journal.pone.0105324.


48. "Anatomical Identification of Extracellularly Recorded Cells in Large-Scale Multielectrode
Recordings", Li, P.H., Gauthier, J.L., Schiff, M., Sher, A., Ahn, D., Field, G.D., Greschner,
M., Callaway, E.M., Litke, A.M., Chichilnisky, E.J., J. Neurosci. 35 (2015) 4663-4675.