Jinyuan Wu's CKM website has many publications, talks, lectures about FPGAs

Brian Keeney: " THE DESIGN, IMPLEMENTATION, AND CHARACTERIZATION OF A PROTOTYPE READOUT SYSTEM FOR THE PARTICLE TRACKING SILICON MICROSCOPE ", UC Santa Cruz Physics M.S. Thesis, 2004
Kunal Arya: " Embedded Particle Tracking Silicon Microscope: An Independent Data Acquisition System for Silicon Detector Characterization " UC Santa Cruz EE B.S. Thesis, 2007 
Brian Colby: "  CHARACTERIZATION OF IRRADIATED SILICON SENSORS: WITH TIME OVER THRESHOLD, COUNT RATE, AND CLUSTER SIZE ", UC Santa Cruz Physics B.S. Thesis, 2008